PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03107.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 247aa    MW: 27687.9 Da    PI: 10.5843
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03107.4genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-096398340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++ E e+++da +++G++ W+++a+ +  +Rt +++
        PK03107.4 63 QWSKGELERFYDAYRKYGKD-WRKVAAAVR-NRTVEMV 98
                     6*****************99.*********.***9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-1059106IPR009057Homeodomain-like
PROSITE profilePS512939.08659112IPR017884SANT domain
SMARTSM007170.00460108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-56398IPR009057Homeodomain-like
PfamPF002491.1E-76398IPR001005SANT/Myb domain
CDDcd001675.79E-66498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAPTKKSRVN KRYGSAISYS PEKEVGNSAK NKQRGSISFS PDGGNSNKSL QRKKKLSDKL  60
GSQWSKGELE RFYDAYRKYG KDWRKVAAAV RNRTVEMVEA LYSMNRAYLS LPEGTASVVG  120
LIAMMTDHYN VLEGSDSDQE SNDGSGISRK LPNRKRGRDN FNTSKDLFQS YSVASTDGCL  180
SLLKRKRSDG SQPRVVGKRT PRFPVSYSHK RDYRENQMSP NRKGKKAEND NDDAHVAALA  240
LTEASQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208129.11e-104hypothetical protein PRUPE_ppa000472mg
SwissprotQ6A3336e-69ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBLM5WJB81e-104M5WJB8_PRUPE; Uncharacterized protein
STRINGGLYMA10G29481.14e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-65DNA binding